Tag: python
Updated python exercises accompanying the book Neuronal Dynamics by Wulfram Gerstner, Werner M. Kistler, Richard Naud and Liam Paninski. http://neuronaldynamics-exercises.readthedocs.io https://github.com/EPFL-LCN/neuronaldynamics-exercises This version benefited mainly from the contributions…
Find the preprint on http://biorxiv.org Ion channel models are the building blocks of computational neuron models. Their biological fidelity is therefore crucial for the interpretability of simulations. However,…
Static website and conversion of the Neuroscience Textbook Neuronal Dynamics by Wulfram Gerstner, Werner M. Kistler, Richard Naud and Liam Paninski. http://neuronaldynamics.epfl.ch
Web application at https://icg.neurotheory.ox.ac.uk, built on linux, mysql, nginx, Python, uwsgi and Django. The D3js based javascript graphical viewer was developed in tight collaboration with phyramid.com. The backend runs analyses in NEURON, through a task-queue implemented…
After migrating to SQLalchemy 0.9.8 (python 2.7.6) I had an hour of bugfixing fun: Running this little test script below in ipython 1.2.1 with autoreload magic on, I…
This is not the first time I try to get this done correctly, hopefully it will be the last. I do not like the indirect control of matplotlib’s imshow,…
Since I had to use the R package smacof, yet the rest of my code usually is in python, I thought the fastest thing to do would be…
While looking for a straightforward way to visualize python cProfile profiling data I stumbled over the nice tool Gprof2Dot which uses GraphVis to generate nice graphics. I am just writing…
Just in case anybody encounters this as well, I just had a build error while trying to build gwPython though MacPorts. It seems the OSX 10.6 SDK is…
In my research I am currently using both Python/Scipy and Mathematica, the former for data evaluation and the latter for symbolic computations. I currently have to transfer symbolic…
As michael asked for it, here it is (links to repositories for update/install in Eclipse itself – i.e. Help/Software Updates) CDT – C++ developer tools, incl code completion,…