Category: Science
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006928 Accompanying code: https://github.com/EPFL-LCN/pub-seeholzer2018 The ability to transiently memorize positions in the visual field is crucial for behavior. Models and experiments have shown that such memories can be…
This was published a while ago on Github. Langevin integrator for SDEs with constant drift and diffusion on continuous intervals with circular boundary conditions. CILES is written in…
I just published a (slightly modified) chapter of my thesis on arxiv, in which we show how to efficiently approximate the shapes of the steady states of the…
Renato Duarte and I wrote a review article for Current Opinion in Neurobiology which just appeared! Synaptic patterning and the timescales of cortical dynamics. Volume 43, April 2017, Pages…
We (Florian Colombo and I) just published a second paper on learning of melodies with deep LSTMs! Deep Artificial Composer : A Creative Neural Network Model for Automated…
After nearly three years, it’s finally out! https://elifesciences.org/content/6/e22152 Ion channel models are the building blocks of computational neuron models. Their biological fidelity is therefore crucial for the interpretation of…
Updated python exercises accompanying the book Neuronal Dynamics by Wulfram Gerstner, Werner M. Kistler, Richard Naud and Liam Paninski. http://neuronaldynamics-exercises.readthedocs.io https://github.com/EPFL-LCN/neuronaldynamics-exercises This version benefited mainly from the contributions…
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6041941 Excitatory synaptic connections in the adult neocortex consist of multiple synaptic contacts, almost exclusively formed on dendritic spines. Changes of dendritic spine shape and volume, a correlate…
https://arxiv.org/abs/1606.07251 Published in the Proceedings of 1st Conference on Computer Simulation of Musical Creativity . A big challenge in algorithmic composition is to devise a model that is both easily…
Find the preprint on http://biorxiv.org Ion channel models are the building blocks of computational neuron models. Their biological fidelity is therefore crucial for the interpretability of simulations. However,…
https://github.com/zifeo/nest-stdpmodule This is a bachelor semester project carried out at the Laboratory of Computational Neuroscience from Swiss Institute of Technology in Lausanne. It was supervised by Alex Seeholzer…
Instructional video for https://icg.neurotheory.ox.ac.uk. Editing and screen recording: Alex Seeholzer Writing: Alex Seeholzer, William Podlaski Voice-over: GavinVoice (Fiverr)
Static website and conversion of the Neuroscience Textbook Neuronal Dynamics by Wulfram Gerstner, Werner M. Kistler, Richard Naud and Liam Paninski. http://neuronaldynamics.epfl.ch
Web application at https://icg.neurotheory.ox.ac.uk, built on linux, mysql, nginx, Python, uwsgi and Django. The D3js based javascript graphical viewer was developed in tight collaboration with phyramid.com. The backend runs analyses in NEURON, through a task-queue implemented…
http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.113.128101 We study an abstract model for the coevolution between mutating viruses and the adaptive immune system. In sequence space, these two populations are localized around transiently dominant…
Since I had to use the R package smacof, yet the rest of my code usually is in python, I thought the fastest thing to do would be…